Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015904276.1_cds_XP_016454426.1_48455
CDS Infomation

[gene=LOC107778650] [db_xref=GeneID:107778650] [protein=pentatricopeptide repeat-containing protein At2g30780-like] [protein_id=XP_016454426.1] [location=join(21228..21393,22331..22767,23368..24483)] [gbkey=CDS]
Sequence

ATGGCATTTAGGATTTGTAACTTCGAGAGGAAAATAGAAAAAAGAAAAGCTTCGACCTTC
TCTTTTCTCTCGACATTCACCGCCGCTGCTCCGCCAGTCCAGCCTCCGATATCGACTGCT
CAGCTACTCCGCCACTCCGCCAGCCGTCCACCAATCGCCGGAGCAGGGTACCACTTTACC
TGGCTGTCAATGATGAAGAGGGTATGGAGAATCTCGGATGCTTCCCAGACGGAAGCAATT
CTCCAAAGATTTTCTGAAAATTATAGAAAACATTCATGGTGTTACACAATTGCACGAGCT
TCAGCCAATACGTTGTGGGTTCGAGGACTAGCGGGCGGAGCAGCTTCTTCCCAACCTGCC
TGGTCACAGGTATTTGCTTTGTTCGCAGACAGGTGGAGTCACGCTGATTCATTGGTCAAA
CAGGATCTAAGAGAAAGGGTTTCACATTTAAGGGATGAGTTGCTAGCTTGCAATGGTGAT
GCTGAAAAAATTGAGAGAATATTAGCGGATAGAGGGGTTTTGTTGTTTAGGAGGTATGCA
GATGGTTCTGCAGTTGTTGAGCTCTTAAAACAACTAAAATCTTCGCCCCAATTAGCGCTC
CAGGCTTTTGACTGGAGGAGAAGACAATTGGATTACTGGACTCCCATGACAGCTGAGGAG
TATTCCAAGGCTATTGTTGTGGCTGGAAGGTTAAAGAATGTTGATCTTGCAGCTGAACTA
TTCAAAGAGGCTTCCAACAAGCAACTCAAGTCCACCTCTTTATATAACGCCCTTATGACT
GCTTATATGTTCAATGGTTTGGCTGTAAAGTGTCAATCAGTTTTTCGGGACTTGAAGAGG
GAAGCAACATGTACTCCAACTATTGTAACATACAACATACTTATCTCGGTGTTTGGTAGA
TTAATGCTGATAGATCACATGGAGGCAACCCTACGGGAAATAAATGATTTGAATATCTGC
CCAAATGTTAGTACATACAACAATTTAATTGCTGGGTATATCACAGCATGGATGTGGGAT
GATGTGGAGAAGACATATAGAATCATGAAGGCAGGAGGTGTCATACCTGATCTTGCTACC
CATTTATTGATGCTTCGAGGATATGCACATTCTGGTAAGTTGGATAAGATGGAAGAGATC
TATGAGCTTGTCAAAGGTCATGTTCATCAGTACGGGATCCCATTAATTCGATCTATGATA
TGTGCTTACAGTAAAAGTTCTGACGTAAATAAAGTTCAAAAGATTGAAGAGTTGATGAGG
TTGATTCCTAAAGATGATTATAGGCCTTGGTTGAATGTCATATTAATCTGTCTGTATGCA
AAGGAGGATTTATTAGACGAGATGGAACATTCAATAAATGAGGCATTTAAACGTAACACG
TCTGTCACAACAGTTGGTGTCATGCGTTGCATCATTTCAAGTTATTTCCGAAACAATGCA
GTAGACGAACTTGCTAATTTTGTTAGCCGTGCAGAATGTGCTGGTTGGAAAATATGTAGG
TCCCTTTACCACTGCAAGATGGTTTTGTATGCTTCACAAAGGCGACTCATTGAAATGGAG
CAAGTTCTTGATGAGATGGATAAAGTGAACTTGGTCTGTTCAAAGAAAACGTTTTGGATA
TTACTTAAAGCCTACACAACGTGGGGGGAAAAGGATAAACTTCATCAGGTCTTGGGTATG
ATGTGCAAGCATGGATATGGAATTCCTACGAATGGATGA

Peptide Sequence

PEP ID

XP_016454426.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like [Nicotiana tabacum]
Sequence

MAFRICNFERKIEKRKASTFSFLSTFTAAAPPVQPPISTAQLLRHSASRPPIAGAGYHFT
WLSMMKRVWRISDASQTEAILQRFSENYRKHSWCYTIARASANTLWVRGLAGGAASSQPA
WSQVFALFADRWSHADSLVKQDLRERVSHLRDELLACNGDAEKIERILADRGVLLFRRYA
DGSAVVELLKQLKSSPQLALQAFDWRRRQLDYWTPMTAEEYSKAIVVAGRLKNVDLAAEL
FKEASNKQLKSTSLYNALMTAYMFNGLAVKCQSVFRDLKREATCTPTIVTYNILISVFGR
LMLIDHMEATLREINDLNICPNVSTYNNLIAGYITAWMWDDVEKTYRIMKAGGVIPDLAT
HLLMLRGYAHSGKLDKMEEIYELVKGHVHQYGIPLIRSMICAYSKSSDVNKVQKIEELMR
LIPKDDYRPWLNVILICLYAKEDLLDEMEHSINEAFKRNTSVTTVGVMRCIISSYFRNNA
VDELANFVSRAECAGWKICRSLYHCKMVLYASQRRLIEMEQVLDEMDKVNLVCSKKTFWI
LLKAYTTWGEKDKLHQVLGMMCKHGYGIPTNG

Transcript Sequence

Gene sequence data has not been registered.